PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g11480.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 642aa    MW: 71341.7 Da    PI: 6.5529
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g11480.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.71.6e-14401450355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Vradi07g11480.1 401 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 450
                      9***************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.772289364IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-8315366IPR016177DNA-binding domain
CDDcd000186.26E-11315364No hitNo description
SMARTSM003802.9E-9316370IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-7334365IPR001471AP2/ERF domain
CDDcd000181.24E-24399460No hitNo description
SuperFamilySSF541712.09E-17399459IPR016177DNA-binding domain
SMARTSM003801.2E-33400464IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-18400458IPR001471AP2/ERF domain
PROSITE profilePS5103219.177400458IPR001471AP2/ERF domain
PfamPF008472.8E-9401450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MKSMENDDSV DLNNQNNWLG FSLSPQMNVG VASHPQPSSA ADVVPTSFYH TAPLNNYGFY  60
YGLEAENVGL YSALPIMPLK SDGSLYGMEA LSRSQTQAMA TTSTPKLENF LGGEAMGTPH  120
YECNVTETIP LSLDSVFYNQ SSRRDPNNQT FQNHVQHITT PQQHQQDLQA QHLSYYSTLR  180
NHDMMLEGSK QSQTSDSNLQ VPNMGDDGVP ASGLKSWGVR NFQTSHAQDS KLIVPVEENG  240
GESGSIGSMA YGDLQSLSLS MSPSSQSSCV TSSHRTSPAV IDSVAMDTKK RGPEKVDQKQ  300
IIHRKSIDTF GQRTSQYRGV TSCKKEGQSR KGRQGGYDME EKAARAYDLA ALKYWGPSTH  360
INFPLENYQN ELEEMKNMTR QEYVAHLRRK SSGFSRGASM YRGVTRHHQH GRWQARIGRV  420
AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG VNAVTNFDIT RYDVEKIMAS SNLLSSELAR  480
RNRETDSGTQ YIDHNHKSSA YDDTEEAILM QKSCENQNDQ WKMTPYQSSQ QLDQNPPRTE  540
SDRTNQSFSV ALDNMFHQEV EESRKVRTHV SNPSSLATSL NSSREGSPDR TSLPMLSGMP  600
STASKLLSTN PNNVNSWDPS PHLRPALSLP QMPVFAAWTD A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510181.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ389141e-140ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A0L9TPR50.0A0A0L9TPR5_PHAAN; Uncharacterized protein
STRINGGLYMA05G22970.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-109AP2 family protein